TAC Struct Reference

#include <tpctac.h>

Data Fields
int	sampleNr
int	tacNr
tacformat	format
int	isframe
double *	x
double *	x1
double *	x2
int	cunit
int	tunit
double *	w
weights	weighting
TACC *	c
int	_tacNr
int	_sampleNr
double *	_data
IFT	h
	Optional (but often useful) header information.

Detailed Description

Definition for a set of TACs with common header information and x (sample time) values.

See also

TACC, MTAC, PAR, CSV, IFT, tacInit, tacFree

Definition at line 87 of file tpctac.h.

Field Documentation

_data

double* TAC::_data

Internal variable: main pointer to all allocated memory for the arrays x[], x1[], x2[], w[], and all y[]'s. These data arrays just point to this array. Allocated memory size is (4+_tacNr)*_sampleNr.

Definition at line 126 of file tpctac.h.

Referenced by tacAllocate(), tacAllocateMore(), tacFree(), tacFreeExceptHeader(), and tacInit().

_sampleNr

int TAC::_sampleNr

Internal variable: Number of allocated samples

Definition at line 121 of file tpctac.h.

Referenced by tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacAllocateMoreSamples(), tacInit(), tacReadSIF(), tacWCopy(), and tacXCopy().

_tacNr

int TAC::_tacNr

Internal variable: Number of allocated TACCs (VOIs)

Definition at line 119 of file tpctac.h.

Referenced by tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacAllocateMoreSamples(), tacFree(), tacFreeExceptHeader(), tacInit(), tacMoveTACC(), tacSortByConc(), and tacSwapTACCs().

c

TACC* TAC::c

Pointers to y (concentration) data

Definition at line 117 of file tpctac.h.

Referenced by abssAboveZero(), abssCalculateCps(), abssCalculateRatio(), abssChannelMean(), abssFixChannel(), abssHigherCounts(), abssWrite(), bfm1TCM(), bfmSRTM(), imgFromSIF(), imgToSIF(), mtgaPlotSVG(), parAllocateWithTAC(), sifWeight(), tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacAllocateMoreSamples(), tacAllocateWithPAR(), tacAUC(), tacCompareConc(), tacCompareNames(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacDeleteSample(), tacDuplicate(), tacEnsureNames(), tacExtract(), tacExtractRange(), tacExtractSamples(), tacFirstSelected(), tacFixNaNs(), tacFramesToSteps(), tacFree(), tacFreeExceptHeader(), tacIndividualNames(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacIsSize(), tacMoveTACC(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotFitSVG(), tacPlotHistogramSVG(), tacPlotLineSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadMat(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadReference(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSampleXRange(), tacSelectBestReference(), tacSelectedTACs(), tacSelectTACs(), tacSetWeights(), tacSetX(), tacSetXContiguous(), tacSortByAUC(), tacSortByConc(), tacSortByName(), tacSortByTime(), tacSwapTACCs(), tacToBars(), tacToPAR(), tacVb(), tacWMove(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSIF(), tacWriteSimple(), tacWriteXML(), tacYNaNs(), tacYRange(), tacYRangeInXRange(), tacYUnitConvert(), tacYUnitMass2Volume(), and tacYUnitVolume2Mass().

cunit

int TAC::cunit

Unit of y (concentration) values: UNIT_*

See also

unit, tunit

Definition at line 105 of file tpctac.h.

Referenced by bfm1TCM(), parAllocateWithTAC(), tacAllocateWithPAR(), tacCompareUnit(), tacCopyHdr(), tacGetHeaderUnit(), tacInit(), tacPlotFitSVG(), tacPlotLineSVG(), tacRead(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadModelingData(), tacReadModelingInput(), tacReadOldAllogg(), tacReadPMOD(), tacReadReference(), tacReadScanditronics(), tacReadSIF(), tacSetWeights(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSimple(), tacWriteXML(), tacYUnitConvert(), tacYUnitMass2Volume(), and tacYUnitVolume2Mass().

format

tacformat TAC::format

File format code: TAC_FORMAT_*

Definition at line 93 of file tpctac.h.

Referenced by abssAboveZero(), abssCalculateCps(), abssCalculateRatio(), abssChannelMean(), abssFixChannel(), abssHigherCounts(), abssWrite(), bfm1TCM(), bfmSRTM(), imgFromSIF(), tacCopyHdr(), tacInit(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadMat(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSetWeights(), tacWrite(), and tacWriteCSV().

h

IFT TAC::h

Optional (but often useful) header information.

Reserved keys:

• studynr and study_number
• timeunit and time_unit
• unit and calibration_unit
• voiname[index]
• sizes
• radiopharmaceutical
• isotope
• decay_correction and decay correction
• injection_time and injection time
• scan_start_time, scan start time, scan_start, scan start, and scantime

  See also

  iftFree, iftFindKey, iftPut

Definition at line 141 of file tpctac.h.

Referenced by abssWrite(), imgFromSIF(), imgToSIF(), parAllocateWithTAC(), tacAllocateWithPAR(), tacCopyHdr(), tacDecayCorrection(), tacFree(), tacGetHeaderTimeunit(), tacGetHeaderUnit(), tacGetIsotope(), tacInit(), tacRead(), tacReadAllogg(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadMat(), tacReadOldAllogg(), tacReadPMOD(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSetIsotope(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSIF(), and tacWriteSimple().

isframe

int TAC::isframe

Sample time: are sample start and end times available (1), or just the middle time point (0)

Definition at line 95 of file tpctac.h.

Referenced by bfm1TCM(), bfmSRTM(), imgFromSIF(), sifWeight(), tacAddZeroSample(), tacAUC(), tacCompareTimes(), tacCopyHdr(), tacCorrectFrameOverlap(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacExtractRange(), tacExtractSamples(), tacFittime(), tacFixNaNs(), tacFramesToSteps(), tacGetSampleInterval(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacIsXContiguous(), tacMinX(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotHistogramSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadMat(), tacReadModelingData(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadReference(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSampleXRange(), tacSetWeights(), tacSetX(), tacSetXContiguous(), tacSortByTime(), tacToBars(), tacVerifyTimeOrder(), tacWByFreq(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSimple(), tacWriteXML(), tacXMatch(), tacXNaNs(), tacXRange(), tacYRange(), and tacYRangeInXRange().

sampleNr

int TAC::sampleNr

Nr of samples (frames) in each TAC; note that more memory may be allocated than this.

Definition at line 89 of file tpctac.h.

Referenced by abssAboveZero(), abssCalculateCps(), abssCalculateRatio(), abssChannelMean(), abssFixChannel(), abssHigherCounts(), abssWrite(), bfm1TCM(), bfmSRTM(), imgFromSIF(), imgToSIF(), imgWriteNifti(), mtgaPlotSVG(), sifWeight(), tacAddZeroSample(), tacAllocateMoreSamples(), tacAllocateWithPAR(), tacAUC(), tacCheckX1X2X(), tacCompareConc(), tacCompareTimes(), tacCompareWeights(), tacCorrectFrameOverlap(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacDeleteSample(), tacDuplicate(), tacExtract(), tacExtractRange(), tacExtractSamples(), tacFittime(), tacFixNaNs(), tacFramesToSteps(), tacGetSampleInterval(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacIsX(), tacIsXContiguous(), tacMinX(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotFitSVG(), tacPlotHistogramSVG(), tacPlotLineSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadMat(), tacReadModelingData(), tacReadModelingInput(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadReference(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSampleXRange(), tacSetWeights(), tacSetX(), tacSetXContiguous(), tacSortByAUC(), tacSortByConc(), tacSortByTime(), tacToBars(), tacToPAR(), tacVb(), tacVerifyTimeOrder(), tacWByFreq(), tacWeightModerate(), tacWeightNorm(), tacWMove(), tacWrite(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSIF(), tacWriteSimple(), tacWriteXML(), tacWSampleNr(), tacXMatch(), tacXNaNs(), tacXRange(), tacXUnitConvert(), tacYNaNs(), tacYRange(), tacYRangeInXRange(), tacYUnitConvert(), tacYUnitMass2Volume(), and tacYUnitVolume2Mass().

tacNr

int TAC::tacNr

Nr of TACCs (VOIs).

Definition at line 91 of file tpctac.h.

Referenced by abssAboveZero(), abssCalculateCps(), abssCalculateRatio(), abssChannelMean(), abssFixChannel(), abssHigherCounts(), abssWrite(), bfm1TCM(), bfmSRTM(), imgFromSIF(), imgToSIF(), mtgaPlotSVG(), parAllocateWithTAC(), sifWeight(), tacAddZeroSample(), tacAllocateMore(), tacAllocateMoreSamples(), tacAllocateWithPAR(), tacAUC(), tacCompareConc(), tacCompareNames(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacDeleteSample(), tacDeleteTACC(), tacDuplicate(), tacEnsureNames(), tacExtract(), tacExtractRange(), tacExtractSamples(), tacFirstSelected(), tacFixNaNs(), tacFramesToSteps(), tacIndividualNames(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacIsSize(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotFitSVG(), tacPlotHistogramSVG(), tacPlotLineSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadMat(), tacReadModelingData(), tacReadModelingInput(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadReference(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSampleXRange(), tacSelectBestReference(), tacSelectedTACs(), tacSelectTACs(), tacSetWeights(), tacSetX(), tacSetXContiguous(), tacSortByAUC(), tacSortByConc(), tacSortByName(), tacSortByTime(), tacToBars(), tacToPAR(), tacVb(), tacWByFreq(), tacWeightModerate(), tacWeightNorm(), tacWMove(), tacWrite(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSIF(), tacWriteSimple(), tacWriteXML(), tacWSampleNr(), tacYNaNs(), tacYRange(), tacYRangeInXRange(), tacYUnitConvert(), tacYUnitMass2Volume(), and tacYUnitVolume2Mass().

tunit

int TAC::tunit

Unit of x (sample time) values: UNIT_*

See also

unit, cunit

Definition at line 109 of file tpctac.h.

Referenced by bfm1TCM(), imgFromSIF(), imgToSIF(), parAllocateWithTAC(), tacAllocateWithPAR(), tacCompareUnit(), tacCopyHdr(), tacDecayCorrection(), tacFittime(), tacGetHeaderTimeunit(), tacInit(), tacInput2sim(), tacPlotFitSVG(), tacPlotLineSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadModelingData(), tacReadModelingInput(), tacReadOldAllogg(), tacReadPMOD(), tacReadReference(), tacReadScanditronics(), tacReadSIF(), tacSetWeights(), tacSetX(), tacWByFreq(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSIF(), tacWriteSimple(), tacWriteXML(), tacXMatch(), and tacXUnitConvert().

w

double* TAC::w

Pointer to weight factors

Definition at line 111 of file tpctac.h.

Referenced by imgFromSIF(), sifWeight(), tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacCompareWeights(), tacDecayCorrection(), tacDeleteSample(), tacExtractRange(), tacExtractSamples(), tacInit(), tacSampleXRange(), tacSetWeights(), tacSortByConc(), tacSortByTime(), tacWByFreq(), tacWCopy(), tacWeightModerate(), tacWeightNorm(), tacWMove(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteXML(), and tacWSampleNr().

weighting

weights TAC::weighting

Variable indicating whether weights are present: WEIGHTING_UNKNOWN, WEIGHTING_ON, WEIGHTING_OFF, WEIGHTING_ON_F, WEIGHTING_ON_FD, ...

See also

tacIsWeighted

Definition at line 115 of file tpctac.h.

Referenced by imgFromSIF(), sifWeight(), tacCompareWeights(), tacDecayCorrection(), tacExtractRange(), tacExtractSamples(), tacInit(), tacIsWeighted(), tacMultipleSamples(), tacReadMat(), tacReadSimple(), tacSetWeights(), tacSetXContiguous(), tacWByFreq(), tacWCopy(), tacWMove(), and tacWSampleNr().

x

double* TAC::x

Sample time (or middle frame time); units specified with tunit

Definition at line 97 of file tpctac.h.

Referenced by bfm1TCM(), bfmSRTM(), imgToSIF(), mtgaPlotSVG(), tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacAUC(), tacCheckX1X2X(), tacCompareTimes(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacDeleteSample(), tacExtractRange(), tacExtractSamples(), tacFittime(), tacFixNaNs(), tacFramesToSteps(), tacGetSampleInterval(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacMinX(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotFitSVG(), tacPlotHistogramSVG(), tacPlotLineSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadHRPLUSHC(), tacReadHRRTHC(), tacReadInveonCSV(), tacReadMat(), tacReadModelingData(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadScanditronics(), tacReadSIF(), tacReadSimple(), tacSampleXRange(), tacSetX(), tacSetXContiguous(), tacSortByConc(), tacSortByTime(), tacToBars(), tacVerifyTimeOrder(), tacWByFreq(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSimple(), tacWriteXML(), tacXCopy(), tacXMatch(), tacXNaNs(), tacXRange(), tacXUnitConvert(), tacYRange(), and tacYRangeInXRange().

x1

double* TAC::x1

Sampling (frame) start time; units specified with tunit.

Definition at line 99 of file tpctac.h.

Referenced by abssCalculateCps(), abssCalculateRatio(), abssWrite(), bfm1TCM(), imgFromSIF(), imgToSIF(), sifWeight(), tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacCheckX1X2X(), tacCompareTimes(), tacCorrectFrameOverlap(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacDeleteSample(), tacExtractRange(), tacExtractSamples(), tacFittime(), tacFixNaNs(), tacFramesToSteps(), tacGetSampleInterval(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacIsXContiguous(), tacMinX(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotHistogramSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadMat(), tacReadModelingData(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadScanditronics(), tacReadSIF(), tacSampleXRange(), tacSetWeights(), tacSetX(), tacSetXContiguous(), tacSortByAUC(), tacSortByConc(), tacSortByTime(), tacToBars(), tacVerifyTimeOrder(), tacWByFreq(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSIF(), tacWriteSimple(), tacWriteXML(), tacXCopy(), tacXMatch(), tacXNaNs(), tacXRange(), tacXUnitConvert(), tacYRange(), and tacYRangeInXRange().

x2

double* TAC::x2

Sampling (frame) end time; units specified with tunit.

Definition at line 101 of file tpctac.h.

Referenced by abssCalculateCps(), abssCalculateRatio(), abssWrite(), bfm1TCM(), imgFromSIF(), imgToSIF(), sifWeight(), tacAddZeroSample(), tacAllocate(), tacAllocateMore(), tacCheckX1X2X(), tacCompareTimes(), tacCorrectFrameOverlap(), tacDecayCorrection(), tacDelay(), tacDeleteMissingSamples(), tacDeleteSample(), tacExtractRange(), tacExtractSamples(), tacFittime(), tacFixNaNs(), tacFramesToSteps(), tacGetSampleInterval(), tacInit(), tacInput2sim(), tacIntegrate(), tacInterpolate(), tacInterpolateInto(), tacInterpolateToEqualLengthFrames(), tacIsXContiguous(), tacMinX(), tacMultipleSamples(), tacNotNaNs(), tacNthSample(), tacPlotHistogramSVG(), tacRead4DM(), tacReadAllogg(), tacReadCarimasTxt(), tacReadCSV(), tacReadDFT(), tacReadGEMS(), tacReadMat(), tacReadModelingData(), tacReadOldAllogg(), tacReadPMOD(), tacReadQView(), tacReadScanditronics(), tacReadSIF(), tacSampleXRange(), tacSetWeights(), tacSetX(), tacSetXContiguous(), tacSortByAUC(), tacSortByConc(), tacSortByTime(), tacToBars(), tacVerifyTimeOrder(), tacWByFreq(), tacWriteCSV(), tacWriteDFT(), tacWritePMOD(), tacWriteSheetIntoXML(), tacWriteSIF(), tacWriteSimple(), tacWriteXML(), tacXCopy(), tacXMatch(), tacXNaNs(), tacXRange(), tacXUnitConvert(), tacYRange(), and tacYRangeInXRange().

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The documentation for this struct was generated from the following file:

• libtpctac/tpctac.h